The team led by Dr Christian Bamberg made the medical breakthrough in November 2010 but only published still images at the time.
The 30-second movie shows a baby as it descends down the birth canal of a 24-year-old mother who volunteered for the project.
The mother spent 45 minutes inside the MRI machine during the second stage of her labour, also known as the 'pushing stage'.
The footage shows that each time the uterus contracts it exerts pressure on the baby sliding him further down the birth canal. When the contraction is over the uterus relaxes and the baby's head recedes slightly.
Medics had to stop recording before the baby emerged to ensure the newborn wasn't exposed to MRI noise.
The film could provide valuable insights into the birthing process as it has allowed scientists to see details previously only studied with probes. It could help explain why around 15 per cent of women have Caesarian sections because their babies don't move sufficiently into the birth canal.
While most MRI machines are tube-shaped, the team at Berlin's Charité Hospital developed a special 'open' scanner which provided the necessary room for midwives and the German mother during the birth on 20th November.
Gynaecologist Ernst Beinder said the birth proceeded normally and the machine filmed all the movements and processes that went on inside the womb.They were even able to use the machine to monitor the baby's heart beat.
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According to The New Scientist the technique was recently used by doctors at Imperial College London to study unborn twins.
The researchers were investigating the common complication of twin-to-twin transfusion syndrome when one baby receive too much blood while the other gets too little.
Using powerful magnets, MRI creates a strong field to make some atoms in the body detectable to radio waves.
The data can be used to create a cross-section of the patient, which provides detailed depiction of soft tissue and bone structure.
MRI scans are considered safer than X-rays but are disliked by patients to the loud buzzing noise made by the scanner as it processes images.
To protect the participants during the historic birth, the mother wore earmuffs to block out the noise and the machine was switched off when the amniotic sack surrounding the baby opened, to prevent the newborn's hearing being affected.
source: dailymail
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